Scaffold Ga0157210_1005980

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1005980
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010315	Metagenome	305	Y
F012661	Metagenome	278	Y
F014365	Metagenome	263	Y
F062704	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10059802	F012661	GAGG	MELKPKKRTPKPEGKRGQVVFYSEQEKKALAHIGSGSIAEGARISIQWAAHFWRVGLRPDFDINHVGICLFVDDELADEL*
Ga0157210_10059803	F014365	GAGG	MKTFQIFKNVSYEYFVEAETLEEAQNKIIQENPEPESEDLIEWVFADEHDGVNWTCEPVTHS*
Ga0157210_10059804	F062704	GAGG	MTQTQALTQALVLAITAPDDQKAQMAIDLSVELAMRLNAADVERCKADALLILGTS*
Ga0157210_10059806	F010315	AGG	MNHLFEEFQGADVERLADCLIAIRKAGLKVDKYTQAGVNQSSGNVWVWSEDWAGCVACSIGFDVFWVYSCRECGEEFEFDTYADLEKFSEENTDDCSMCRTEEVAA*