Scaffold Ga0157210_1005682

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1005682
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2501
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10056825	F047059	GGA	MTKSSAFLEYMKIHKISLEQDLEDARNNIPLNEDEYFESDAFYMGAIEATEHLLSVATGIMNSTNERYNNE*
Ga0157210_10056826	F000263	AGG	MNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLFDSIAREEESGEAMDSMDRTRCEGALDTLAELYNLTYQLSFAIGARNEARG*
Ga0157210_10056828	F000441	AGGAGG	MKMSDAYINDQLSTAQKLLWGGSETENIAAHNIISKLIQDRVEQTDQI*
Ga0157210_10056829	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAEAKGIKFTAETPANKAK*