Scaffold Ga0157210_1005527

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1005527
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2560
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10055274	F000671	GAGG	MEKILCYSCNKPKNQLNAKRSALLPITLLMCETCISSKFEPRWVVILSGRQNGSESVRDFVLKKRYIGIDISASELLL*
Ga0157210_10055276	F000473	AGGA	MANDHFKHGINQWTGEPNKPVFYTAEMKKRVKEIPCPPMLMMDIVKYPEFLALRLYEDNFLQFEGSKKERVIDYVNKVKGLIESYGVRCELEGAPSERVL*
Ga0157210_10055278	F066776	N/A	IGSTLLNLTLKGVDVFIKRSITKTQESFWDNYDLVIWKKDKGGYTNRKGLFRKDEWGTAEKISVDNDGIWKLPAKYVKYFK*