Scaffold Ga0157210_1004226

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1004226
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3110
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022414	Metagenome / Metatranscriptome	214	Y
F037727	Metagenome / Metatranscriptome	167	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10042261	F022414	AGGCGG	MSKTQETKLAEQLANLADDHWFNPTIFGRYLAEQPLYTIDRIMEMVSYIISEQAKMYELLRLKGTSSEGLLLANELNECIKAYQEVNVISNLKLPKPTVYNIKREEPVKSKQFGWIDIDKNPFDQV*
Ga0157210_10042267	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYERLVEIYKVAFKEGAKK*
Ga0157210_10042268	F037727	GGAGG	LITPTKSSKFLEYIKLHRISLIQDNENEIQDSNDPNWNFLQGQIVATEHLLSVATDIMNETNERVYG*