Scaffold Ga0157210_1003540

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1003540
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3560
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063624	Metagenome	129	Y
F082586	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10035401	F063624	N/A	MAQSAVGAIRAGCQMLSEGKAFIEDAKSEVEGIVGQVKETYETVTGLWAWITGLFGGTKQTEDASPTAPVTAAETPKPVAKKTKKLPEPELSYEEFQARAVHEICENLKVYFEAIRHLKAHCRELEEEALTTERVADSAIDRIEMQWQMKELNKQLKQAMIYGTPEELGLGAMYKEFLLKYDEILEEQEVARELKRKKERDTAWQHEHRNEILVSKLIYGAVVAIVMLELIGLYLAL*
Ga0157210_10035402	F082586	GGA	MKEFWFWVAIVTLMIFIMMMLSFAIAYQSKQLNKAEALLTRIEEKERKVKLLERKDDE*