Scaffold Ga0157210_1003168

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1003168
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3889
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F005299	Metagenome / Metatranscriptome	405	Y
F025025	Metagenome	203	Y
F032282	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10031683	F005299	N/A	MNKNITPNHLIDPIDTPNEIWLNKVGYDSANKRMVAKVYKHLWNVMNFVSKPSWTMIIREMLIEDGRLNEVSLNGYYSTIRKNLKDIKVIKYNGRKGLEKGENWDRFFGEEDWSWFRTNTESGGYGIIVK*
Ga0157210_10031685	F025025	N/A	MNKKVKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGEIETETKMVKLETSLIKNVLSKKEKRELIATNVLEGALVSTKPTLDTAYSTYYNGGSLNVETTKGNGEDTDK*
Ga0157210_10031688	F004696	N/A	MDFAIDKLKDDEVVLMKKIKGLKDGKPKWKCNEELVELRSAIKLLERYNEMTHQQMENEEEYLMELFEQHPPKAKA*
Ga0157210_10031689	F032282	N/A	MNSNSIVDTINSIDIEKYNTLEKEREKVMSDEKFIQWCKEMNIGVRVEVKDYRSNELMNQYTNYPKWVMRQF*