Scaffold Ga0157210_1003066

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1003066
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020538	Metagenome / Metatranscriptome	223	Y
F043361	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10030663	F020538	N/A	MIRLPAGCARFLCYAWIITGTAFVLGLHKGSEDLSGAGLMAIGLGVFGLYVTRPRQD*
Ga0157210_10030664	F043361	N/A	MELELSEELAALVMRLYSTQLKRSADEGGGVELSFITNNRLYHLMVQTEDQPTQFTLSAGVSNPFMEAPSGLMQGFVQQMRARYPSVHYGPRGPHGADFGASALGQKFPGLPLQAEFLRCKQAIDLCLDGTSVVIRELEGD*