Scaffold Ga0157210_1002050

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1002050
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5536
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Thorselliaceae → Thorsellia → Thorsellia anophelis → Thorsellia anophelis DSM 18579 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10020502	F002406	N/A	MNEPTPLQWIRAMSERLRDELSKEYDDETKDLIVRAFSQGLFIKPEILEELKSSSLIESDYFEDAE*
Ga0157210_10020503	F010618	AGGA	MSIQELIKKLQEIEAKYPQYSQDTEVVLAIHNDNEFSEEVGIDYIDEVVHKALDTHSGYICRIVLTGEYNQED*
Ga0157210_10020505	F006182	AGGAGG	MKVKFNVCGSLEVPDDAIKHYDVAGKLYALEFNDKMYMLQVCFVAEGGAGGIDMITDHQEMENHSITNVRYSDAEFED*