Scaffold Ga0157210_1001865

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1001865
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5943
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F012666	Metagenome / Metatranscriptome	278	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10018656	F092032	N/A	LYGIGSGQVASLYVQSYSVGSGFNNTGTVVNEDGLTITGRYDDRRSEIMIEGVATATSVPQLGAMIDFTAKTASAYPGGVASVSFSGVITKVDDRGSSKGFVSVSITAESYEEITY*
Ga0157210_10018657	F001055	N/A	MGTRSIRHIVEATLATYLSTQTGLTDVAFLTGDSAVTQTLPKAVVLCDSAAVPPDLQEGLGNYACSVRITLFSNADDTTLAEHRARCAALAGNMRDLSSIQAAFAATGDATCYDVTVRSEDEGIDERSWATAFSFDILTVLPSA*
Ga0157210_10018659	F012666	N/A	FACLISDPAVQTVLEAGGYMERTQYSVRIPAATASWSLPDGSIGASTAIISGGVPIASLAQGKKIVAGGKTVRITTQTYKPGSAWVTLIVIDDNQ*