Scaffold Ga0157210_1001758

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1001758
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6243
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F007263	Metagenome / Metatranscriptome	354	Y
F009530	Metagenome / Metatranscriptome	316	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10017581	F074872	AGG	MSDPNATILPYTERRKQMTVQDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPNKETRWTSVSASTLA*
Ga0157210_100175813	F009530	N/A	MGELIMTITYSIWQGSRLLSIDNVAHEVKAIDHLIASLNDSDLGKKTKFTANIQNIKVGN
Ga0157210_10017588	F000447	GAGG	MGHIEIFRLNDEGAGWVDLDQATPEELLTLEIGLFQEGAL*
Ga0157210_10017589	F007263	AGG	MNIIDKTDFYEIADEQFFCCDESQFKYYCEEHLEFMGCYFCEFDYSKDCEEQH*