Scaffold Ga0157210_1001327

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1001327
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7761
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013761	Metagenome / Metatranscriptome	268	Y
F058139	Metagenome / Metatranscriptome	135	N
F097347	Metagenome / Metatranscriptome	104	N
F099310	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100132716	F013761	N/A	MNVELIISKDRIPYLVEGLGADRVTVSEYDEEQDSVAFEVRSQLDVLYAFHAGIRYGSDSMANALLKR*
Ga0157210_100132718	F099310	N/A	MSKLHYYKDIIISFLLTLLFGVRVEGEKINLEYGVEAPKRTTVPSDQPDQYSWFAEHRVSSLHGVRQHVFL*
Ga0157210_10013273	F097347	N/A	MPYVDLESVNKSTVVSDLKTVIGKKITQNQSPTLVAKLVKVGKVNCVFESVESDYKETIGLVGYKVGVQYKVPTQRAWNSFFY*
Ga0157210_10013277	F058139	N/A	MAIYNNDRDPNDIQWEKEQMEIQVLEPRRKFEQWWEQNKERILAEDQLNHDMQFKSKFIKDGDY*