Scaffold Ga0157210_1001060

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1001060
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9226
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100106012	F041777	N/A	MKKTLIYIAILFAAMLIAGTIDESTRQLEQTPNHTTNK*
Ga0157210_100106015	F023350	N/A	VTLDQYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKQKIRANVIRKIK*
Ga0157210_10010602	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELTKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITADTFTDDEYKLCKAKARKTIYFEQNLNKPMVERMSDRKRQLLKESIAFEGMRELYKLYLSKQ*
Ga0157210_100106021	F046371	GAG	MNDNKLNFLKSQISAFHPEWTKEQVEMEAIRIYNEANTIDDDDEGCLYCGS*
Ga0157210_10010606	F049635	N/A	MNKQIYSTPFGRLVKINFKTMQNFKNVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND*
Ga0157210_10010607	F071250	N/A	MKKLVSLEKRVENLLKKYKFLRNNNKALCVKIWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKK*
Ga0157210_10010609	F045753	N/A	MKSFYCPRVSYCFTKDDMNTLNERIKVIANNYNDDVTGWFDVNEEQHLIFIDEQDNMYTIHLRGRFWRADEPNFDLEFVRLEKDGISFHFDTEMFDETV*