Scaffold Ga0157210_1000971

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000971
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9780
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006385	Metagenome / Metatranscriptome	374	Y
F013526	Metagenome / Metatranscriptome	270	Y
F039631	Metagenome / Metatranscriptome	163	Y
F056558	Metagenome / Metatranscriptome	137	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100097111	F095473	GAG	MNTKTCQVINCESTELVYSGTDAFMLGINTETYCYKCANAYAQIDRVMSKVRQDYLDSLTPTSTLTTSD*
Ga0157210_100097113	F039631	AGG	MNTLDKNTIKHSRYGHLDLEQRILLGATMVANGEVVSFRGASADTYNKVMALANKIKQDREFPQCPCEECN*
Ga0157210_100097121	F013526	AGGAG	MKKNVLISFVTEADTDLQAVFNLNKIFAKLSENELEKFNAFEVLPVE*
Ga0157210_100097125	F006385	GGAG	MILDNGTLIAIVIALAGSVGMMIAFWQRNIQLEKEIRRLQVALRTERLKK*
Ga0157210_100097127	F000447	AGG	MGYIEIFRMDNEGAGWIDLSKANEDELFNLEVGLLNEGALFTTKEAE*
Ga0157210_10009718	F056558	AGTAG	MGILDNFENAWDIDFQFESKPMSETDAMGKEKFWEDLGRPEETSLAVKLFSETCCDNCSCKSE*