Scaffold Ga0157210_1000897

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000897
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10414
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011386	Metagenome / Metatranscriptome	291	Y
F011487	Metagenome / Metatranscriptome	290	Y
F029107	Metagenome / Metatranscriptome	189	Y
F039631	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100089718	F039631	AGG	MNTLDKNTIKHSKFGHLNLEERINLAATMVANGEVLSFRGASADTYNKVMALANKIKQDREFPQCPCGECD*
Ga0157210_100089719	F011386	N/A	MQGNTRDINLDTKELVMDFIDLYQSTLLSHQRVKITCDLLGIDGYLQGVSK*
Ga0157210_100089725	F029107	N/A	MTNHAIISLSNTESTRLTPNGLHSGMDITIQNINEVSYVYLGGEGSLNPEDFGYRLAPGAAWSVELPGTDSLYAIADSDGAYIAIIQTGLE*
Ga0157210_10008973	F011487	AGGAG	MANMYEEMYDEFYSMICPSCRENSVDMEEEVCTHCLLEEMSAMYNEDIALEMSLSLDY*