Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000814 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000814 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11127
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11127

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012001	Metagenome / Metatranscriptome	284	Y
F012770	Metagenome / Metatranscriptome	277	Y
F014237	Metagenome	264	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100081410	F008237	AGG	MIEWERIKHWDYVVDSVASEYHKKFELDFDDIKQELYQWFVTHPNKLNEWEAIGEKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLPSVLRGDFNITAQLNLGRPGKPSAPNEGGNLMAMMIEVDYGFWKLSKDDRKLLFLRYAEAMHFDDIAKEMELGSEDTARMRNKRAIKKLIHKIGGFKPYKDEDFDPAHSDLES*
Ga0157210_100081413	F012770	AGCAGG	LVSREDGYIDLDFDPNEPPESYCHDCGIQFDNSFDLVDHTLDDDEEFDPYYLLPNGMQLLLGSLLRFLYHHAEEPEQIKLMTQSTFITLFAAEMGFDMIDELVEDMVVKSAMQNLDKNIEKLLSKDKDEEGGE*
Ga0157210_100081416	F079979	GGA	MIREEEDDVTQETRALVVLKIKEETEKLIQKIEAAKVPITDEWTDGLNAGLSWAQRILRKDKSAT*
Ga0157210_100081422	F012001	AGGAG	MFDTNKLKQIGLSYFRAAATAVVALYMAGQHDPKVLASAFVAGFVGPILKALDTNSPEFGRTK*
Ga0157210_100081424	F014237	AGGA	MDTLKNVMMRILAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFYLADGSLTTDEINAAFAKVDKKASE*
Ga0157210_10008148	F003658	N/A	MFDLYNLENPTLACICGCLMFEVTVMWDSETREVGWYDLRQKCKECGTISTAPTPIDGEM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000814

Overview

Ecosystem & Geography

Associated Families

Sequences