Scaffold Ga0157210_1000680

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000680
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12699
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F020166	Metagenome / Metatranscriptome	225	Y
F042904	Metagenome / Metatranscriptome	157	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100068025	F073565	AGGAG	MSDGINLTGFNEVKPAVQHTIGEQYAADPASAFASTDKSTQDGSGVGQGGK*
Ga0157210_100068034	F042904	N/A	MAEMTVMDEIIGEVAEDLYKKWVSAMPEDEKNQQAFSAMTKNAHETTLFVIQSFMNKFNAAAEELKDK*
Ga0157210_10006805	F007921	GAGG	MIDWLVNRIFRWDPLRNAIFDEVRLYQSVSRSMWEYEKEGPTNLTWSEGDIWYGWTFNPVTNRYYFDDIGNESLMGLWEDQWAWESSDSAV*
Ga0157210_10006808	F020166	GGA	VKEPKIMKMDWRPLGYWPVYTDGKLTWEKDSDEE*