Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000666 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000666 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12920
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12920

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F025937	Metagenome / Metatranscriptome	199	Y
F098671	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10006661	F098671	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDVALGANKYAGIRVTIDPNTESFLNFYLSNFKIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYA
Ga0157210_100066610	F005050	N/A	MACVSYCDTSLLEHDLVLCNEYKLGGVSAIIVGACGTELVDPSDATEVEALLASGEARMISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGNSVFWNDVNNRRISWILAYMCDSGKVLYVTAPVGITTSANFILPEQNNELQRYEVTFSWRNKNIPAQYDAPPGVF*
Ga0157210_10006665	F008936	N/A	MASFDELVKQKIKLLETVPEAIVTAAEKTQREAWRKLGPLLAEMDVDATGNIRQTEDNIRRIGLITEELNKVLAGGEYRDAVQSFLSSIDEGVQLTDDIAKKIDSTFEPDNVQRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVAALQGVIEGTEANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGQIYHRGEIEAWGNGENSAGINDIRNGTWAGRIEGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAEAEGFA*
Ga0157210_10006666	F025937	N/A	MDTLTFLRTEIEQQMAKSRRILHLPSSDESGTIGEASTATGSLNKLRSLYAFIKPISDQLFTIYEFCLVTMGKMRYGDLFGGVNLVYPTSFDISTPSDYLAVISEGVKAGVPPSITFSNVYNYIRAIHYTDEETSAVYDLIINADELLLMSNADILARLASGSVEKWQDVLHNSGPQLIMELIRDFIPTEGTQRFLDQPMSDQITQLRAKAAEKIAVTLDPIQQAQQTLLNGIV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000666

Overview

Ecosystem & Geography

Associated Families

Sequences