Scaffold Ga0157210_1000598

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000598
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14233
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100059810	F003134	N/A	MTQWSPVWLVEIDGVEYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQTAIPVDINSTISVSVKDTSGTFVPIFGGNVVDIGLEVRDMGSTMFTQTYSITALGALARLPKVIFTDALTRDYDGDQIFEVLSTVLFNTWAQVAGSETWASYDPTITWANAGNNGLGEIDRPGNYDLAARGAGQDPIDVYSLVSALATSGLGYLYEDAQGRIGYADSTHRTQYLTANGYVDLDANHARAAGLRIETRVGDVRNAITIKYGATSSSDVSASNAESIALYGNLAQVITTTLHDATDANNQAAFYLSLRANPQPIFSEISFDLTNPEIDDSDRDNLINVFMGESISINNLPANMGSIFQGFVEGWSFQANYNRLSISLILSPTAYSLQALQWDEISNTFTWSGVSLTLDWARATIIT*
Ga0157210_100059816	F025683	GGAG	MVLDLLDPQTLGRLVLVIILMVISAAAGYAKGFKEGKREGMARRKAISRHFANKVAD*
Ga0157210_100059817	F005697	AGGTGG	MGFLDNYEASRERLERWLATYPTGRIETRIVEFSSEKGYVLVEAKAFRNDTDLHPAGIDYAHGYVGAYQPNMRRWYVEDTTTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKIANAEKDYDYWTTKHGDVPSFKTAAEAEQSGVPSLGSSMDEIAKQLGGQLIEEAPQCSHGHRVWKQAHEGAPKNWGGYFCTERTKATQCAPYWYVFTSDGKWKPQV*
Ga0157210_100059820	F024931	GGTGG	VKMTLTHAEQMVCMLSAIKWETDTGKTMSNPQRYQKDLSTYEYLVETAEAIGSEWVVAKYFDLPFDPYQQKFKGTADVGNGIEVRWTKYVAGQLIVHEYDRPNDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI*
Ga0157210_100059821	F009503	AGGA	MDKVQFECRKCKKITVQLIHKITDNLPDGVEVIQCTKCEVMGIAQIGVSNADL*