Scaffold Ga0157210_1000549

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000549
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15141
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F015860	Metagenome	251	Y
F032265	Metagenome	180	Y
F057944	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100054913	F015860	GGA	MHISYVKIVRNDEGTVIDTQEANGEMRRLNYQIEVLKAALEIEMDRVYDLKELLDQVRRLAFELNEEVLKVQS*
Ga0157210_100054920	F057944	AGGAGG	MMEQHITDDHPTVRVFPRTLQEAYPKEYVNEDIITGPHRDPPLSDFAILLALIAVASFFFYMFNKYIWI*
Ga0157210_100054924	F032265	GAGG	MATLPQFKQRQIARRSSSDIDRLAKQYKSAVDQITGEYQTAFTGYQAGVAEKMKPFEAELATYKESLLPTYEAQKTSYQKNLEDYNKLLADIEANPVTEATGYKEVKKPRFNLFGIAGYETKSEPFTYYVPKEIPKFTETAPTPPATPMAPTVEAFDSGQFAAKKEEVEGRFKRELGERRAAKIGAVSRRMTRPLLQGEM*
Ga0157210_10005495	F009952	N/A	MQISTREEHIMLNQGKLIRDAQLNLFEQRDATFLARCRTIAAEVCRQQGSVSINDVRERIQLPANLHPSVLGAVFKGKQFKMIGFTEANHPQAHARIVRVYQLQEL*