Scaffold Ga0157210_1000401

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000401
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19038
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N
F103247	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100040110	F052594	GGA	MATKYYGMDKNQVALCEAMVTKYPKGIKTNNVVSSASTLVSFYNSKDEKNKRFYEYMNPERMVSLLWQVINIKNEKEDVKEAAVRIINKLLLNIVVN*
Ga0157210_100040112	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLILSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQTTGTEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILAVIYLPAQNNHFFAYNTMSLEKIDNGLLERRYYSEADDSYTIDTITYDLLSGIDLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGIWKYKNKYYDYIGLLKFVSKYVKRNFLNKKINYGKIRRH*
Ga0157210_100040113	F054865	N/A	MEVKTNRFIIKYKEGIVSVAANDVAEAIERFKELRIETSAKELTIVPADEMYKRREEIFQKE*
Ga0157210_100040117	F002778	N/A	VKEYNAQMMEIKAFCDEVNAWISTAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT*
Ga0157210_100040119	F090393	N/A	MALERKTHFNVSFYDYEQDKIQTWGLTGSSRLALLVHTIAFQKDKIEANKINKEEIIKSALDYLIHDLKKFLETPYITEDNA*
Ga0157210_100040120	F019647	AGAAG	MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTMPAPTGVAVIDQQSEKPDLAAMVFEMSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR*
Ga0157210_100040123	F003786	N/A	MEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGRLEREKLYAEFPTMIKEFTGKTWEEVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK*
Ga0157210_100040124	F008078	N/A	MKQTPKEKAKELFNHYYILIQDIGGELGQEILVSILAKHCALFAAREVLQDKWNTEDYDQYHYWEEVEHEIENYEE*
Ga0157210_10004014	F103247	N/A	MGYTEKTVLLRGLNFDSGRTSNRSAGGVAGTGSINPTNSEPTTQNNSVTKVFTEEFLDSYTAILTVTKNGGVLPGVTQQILVFQNGQLLVDSQYSVAGSNITIDSVTHYDGSNYIIFFIII*