Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000249 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25917
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (17.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25917

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (17.95%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F039629	Metagenome / Metatranscriptome	163	N
F057211	Metagenome / Metatranscriptome	136	Y
F065767	Metagenome	127	N
F084121	Metagenome / Metatranscriptome	112	N
F088879	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100024910	F065767	N/A	MTSLNQEQKDEIVRLYKLKVMNKNIATILNISRHVVNNYIYKDYLLTNERAKNTCAYMKDADQVIELYVKGLPYKEIMSMTGVKYHHLCEIIKLTPKRRIDPLSIKLVRQIESMVEENWRTCDIAKELDLEYNRVSHWVRKARKEGVH*
Ga0157210_100024916	F057211	N/A	MLKDHHFIFEQSGFSLELESFENEGIVLDLYFGNGKSLTLELYDCLTEKFSDHYRTICAILDPFIIEQLENNVQLCFTK*
Ga0157210_100024934	F088879	AGGA	MREIATDIRKAVIAAISPLTLSGVTLPIYDTELPPGINPAVYQGSAAYVLITDQNETETTNNDCTIRQNATFQINIVTKFAQGNGGKKLSENISNAIQLKMNLTDIVLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS*
Ga0157210_100024936	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGSLANFEDFTGLGIADAFTGNAIPKLDYIYALLHECHKVACLRKSTNPVSLDELKVWIEGKEVMKLFNDVLADLLLELGIGESQEKKT*
Ga0157210_10002494	F084121	N/A	MPRKKATTSHSKFILKRRFINNFNEYTDWQDIGYGEFLSIEDVQEKIKLMIQNYKNKHMEVHFEMNGKLLDFNGNEISHPIKFTPK*
Ga0157210_10002497	F039629	N/A	MIEALDEVSEIPFDVFWDKFIEARPGDYDKTYTQGIWLKMREANRVLAFGYLCRFGTDYKAPHIHLEVFDLPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000249

Overview

Ecosystem & Geography

Associated Families

Sequences