Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000243 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000243 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26415
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (65.08%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

26415

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (65.08%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001507	Metagenome / Metatranscriptome	681	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007921	Metagenome / Metatranscriptome	342	Y
F009143	Metagenome / Metatranscriptome	322	Y
F009530	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100024310	F009530	GAGG	MTITYSIWQGSRLLSIDNVAHEVKAIDHLMDTLNASDLGKKVKFSANIQSIKTGETK*
Ga0157210_100024311	F009143	AGGAG	MMTKWDTIQEDVKDAYVYLDEEEMYNKALEEGAIAAFDPFDDEDELSKSLTLDWND*
Ga0157210_100024315	F004840	AGGA	MYKLTCQYDYEESPHWSATYENEFGAWENFFKFTDWGLANEYSTVNLYTPTGKCYTKVFYRNGNVQVKA*
Ga0157210_100024328	F003422	N/A	MMTTNGTKYTFVCDPDECDSLVELTTVDGFGFPNGVVENTCPCGRKMSYIGATILSSTNQTKEEQMETTTPTVPETYNPDLVVTYKVIRGFSDAEYETAKVTSIEWDIYNGKQSQKTTGVLQNKISTVKDIILEAYAESEDQETLRAIAEALDIQLTRTVEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0157210_100024329	F000311	N/A	MYFELTAPNRLSMERAYWDAHIIGLDPTVMSALTFNIGTGSIEKVSRIRDKYNLIESYTSEHEPTEIYNRR*
Ga0157210_100024334	F001507	AGGTGG	MSTTYKPYAIHELVTAIYEDNYSHFEFMENMNGGDCDCNLHQTMNVIAAYQEGLIEGPWGE*
Ga0157210_100024338	F000441	AGGAGG	MSDAYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRVEQVDLI*
Ga0157210_100024339	F000852	N/A	LKGDYQMATKREYLKQQGITVGVRGRFSGAAKVALAEAEANGIKFTAEAPTKKAK*
Ga0157210_100024352	F007921	AGGA	MINWLVNRIFRWDSLRHAIFDEVRLYQSIDRGMWEIENLNPTNLTWSEGDRWYGWTYNSKAKRYYFDDIGNESLMGLWEDQWLMEADESALK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000243

Overview

Ecosystem & Geography

Associated Families

Sequences