Scaffold Ga0157210_1000241

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000241
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26506
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017642	Metagenome / Metatranscriptome	239	N
F049411	Metagenome / Metatranscriptome	146	Y
F049612	Metagenome	146	Y
F100418	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100024111	F049411	AGGAG	LKKYSAEVVEICENGDAILQFSDEMINDLGWEPGDVLTITMVDGAVHLKNITKHPDLFKD
Ga0157210_100024113	F100418	N/A	MLKRDKNFRISKQTKRTMATFVDPVARNAYKNSMIEAQLFGSQVFEKKKKRGNETETA*
Ga0157210_100024119	F017642	GAGG	MNQRRNFIKGAGIIGAFAVGVASYRQVKEMANEHKDISHLAPPSNATTIQFTGAYGEKPKAPEPTMGQHTLYVNGWNEQVTHRVSMTVGKDNRLWMKIGDEWHRVAIES*
Ga0157210_100024130	F049612	AGTAGG	MRELSNYYGDNNNRMATVYRDKDGYFATVKSATGVYYTARFETEEDAEVYSEDWVNKDE*