Basic Information | |
---|---|
Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000241 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 26506 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (76.32%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017642 | Metagenome / Metatranscriptome | 239 | N |
F049411 | Metagenome / Metatranscriptome | 146 | Y |
F049612 | Metagenome | 146 | Y |
F100418 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157210_100024111 | F049411 | AGGAG | LKKYSAEVVEICENGDAILQFSDEMINDLGWEPGDVLTITMVDGAVHLKNITKHPDLFKD |
Ga0157210_100024113 | F100418 | N/A | MLKRDKNFRISKQTKRTMATFVDPVARNAYKNSMIEAQLFGSQVFEKKKKRGNETETA* |
Ga0157210_100024119 | F017642 | GAGG | MNQRRNFIKGAGIIGAFAVGVASYRQVKEMANEHKDISHLAPPSNATTIQFTGAYGEKPKAPEPTMGQHTLYVNGWNEQVTHRVSMTVGKDNRLWMKIGDEWHRVAIES* |
Ga0157210_100024130 | F049612 | AGTAGG | MRELSNYYGDNNNRMATVYRDKDGYFATVKSATGVYYTARFETEEDAEVYSEDWVNKDE* |
⦗Top⦘ |