NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000218

Scaffold Ga0157210_1000218


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000218 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28142
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F013741Metagenome / Metatranscriptome268Y
F031399Metagenome / Metatranscriptome182Y
F047566Metagenome149Y
F068428Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100021819F011142N/AMAVVKVSGKVSKVFGASGQGLSLVESYKAASGEDYTRTWTVWFAVAHNLVAEQDVTVFGQLSTKIEDFEGRDGKPGRKVKLDINNAQVADVVAPPAPVVAPPANMPF*
Ga0157210_10002183F006985GGCGGMIREVCSCNAEFETDDRDAIELVKSWRRTHKHDVRPEQRDATALTNTDIALGFKAMALPVDEDDE*
Ga0157210_100021831F047566AGGMMKNRVKQITDVLAILAWRGFGIFLFILGGSAGVGAALTGNWLNGVIIAWGTLMIGVIGAIGYAIATTGQVTKADVAKASNDAIQKAENQAKQAK*
Ga0157210_100021835F013741N/AMSEAPKPTNQHLLLQIVRDIEILKANSIQILESSRDHENRIRELEKQNNRNAWVPALITAVITSVIVIAFTKGLGL*
Ga0157210_100021840F031399GAGMNQINLRIVLSDGSTIDVATSAGDIVKWETYFDLGIDKLEKLTHLLYLAWLAVTRLKKTGEDFDAWIETVSNVQVDDQKKV*
Ga0157210_10002186F068428GGAGMLEDLVLPTPQYGCRVRTLKEGMSKADAQILEDAVNNPAWPCKTLQNELMKRQIKLSDTVIKKHRDGRCSC*
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