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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1000210 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28708 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (53.12%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004256 | Metagenome | 446 | Y |
| F024484 | Metagenome / Metatranscriptome | 205 | Y |
| F029410 | Metagenome / Metatranscriptome | 188 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_10002102 | F029410 | N/A | MEITFNKDWRNIAISLSGGADSALLAYMICDLAKDHNVTIHIINHVRCWKTKPWQQHDADRVYNWLFQRFYHTTFKRHTNFIAPELEYGNIGPSLVDEYGKHVSGDNIEIRAFAEYVCFNENVDAYFNGVTRNPKDIDLGGMTSRDIDPSPSNKHLSEMKHMGKMVYHPFRFIDKSEIVKKYKELDIMELFELTRSCEGEFNSVNYESYTPGQYVPVCGNCFWCKEREWAIEQSK* |
| Ga0157210_100021022 | F004256 | N/A | MDYEYYYNNVPGEGQSRNNLIYTSLISHDKKTFVQWYTTESDYHKGQNEVVDPKLMKEKFHRELHYLSNMAHHNPDMVPTIKEVNIPEQKIYLEIDGLDFWNRANCTTENYDSVLPDWQDQMCDIIQAHKARGWHKYSMHPSSYFIVDGKLKSINYFFTYHKDEKNISISEVESHIHSNRQTEMRKHLESLGIEWNTPQPWDLMDQLCWESFRKNYPADFIERVKCIK* |
| Ga0157210_10002103 | F024484 | N/A | MKTTINEPTGDFFYDPWVIKDEYKGTVWETLYNSLPVSKGEARIIILDPARCYQIHADIDDRYHLNILGEECYLIDLVREQLHRLEQDGVWYDMDAGMLHTASNFGRRARVQLVVRKLLKRNKLTNPVAVTLSTTIANTDDARFMFDNTVSPWLNESNKLGFINDFGHSQVGVKFNIEQDKLDSLRNILTSDFKIL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |