Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000175 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000175 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31770
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (80.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31770

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (80.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F009952	Metagenome / Metatranscriptome	310	Y
F015860	Metagenome	251	Y
F032265	Metagenome	180	Y
F036215	Metagenome	170	Y
F095419	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100017514	F095419	AGGA	MTNDNEIKPSEGKAWKNAEKTEAWHGDYKGTFVMPDGTKHFLDVYVNKKPDGAVWFKLKVGKAKISNSGAGSVAPVFAAAPQPQPKAVVPDNDDDIPF*
Ga0157210_100017518	F036215	AGGA	LADELACPQCGRVHPDAKLITLPDGAKVGSYSEAYRAYTEAKWVLDKLPVTVNRRRKSTPQISRRDYILAVQDRRGQESANELALMVTKLWKASK*
Ga0157210_100017520	F015860	GGAG	MHVSYVKLFRDDEGTVRDTQEANGEIRNFQHQIELLKHALEREMNTVADLRELLDSVRRIAYELNEEILKDTHAKTEE*
Ga0157210_100017527	F009952	N/A	MKVGQIIRDSQLDLFEQRDADFLAQCRAVAAEVCRQHGSVSINDVRERIQIPAHLHPSVLGAVFRTKQFVKVGLVEANHPQAHARVVRVYQLQE*
Ga0157210_100017535	F005703	GGGGG	MIGWIAACIFAGLMLPLIAMLYLDTLETKNEAKVALEKLEKLRRQVEQQQRKGKEND*
Ga0157210_10001758	F032265	GAGG	MATLPQFKQRQIARRKTSDIDRLAKQYKANIDALTGEYQTAFTGYQAGVAEKMKPFEEQMATYKESLLPAYETQKTAYQKKLDEYTATLAELEKNPVTERTGIKETKKPRYGLFGLAGYEVKREPYTYYEPKPIPTFTEKAPALPTAPVAPEIEKFDEGEFGTKRTAAESTFKREVGERRAARLGAVSRKMTRPMLRGAE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000175

Overview

Ecosystem & Geography

Associated Families

Sequences