Scaffold Ga0157210_1000157

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000157
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34014
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (81.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077035	Metagenome	117	N
F085188	Metagenome	111	N
F088306	Metagenome / Metatranscriptome	109	Y
F096876	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100015718	F096876	N/A	MSEHIERIAVLEAEVEKLQASQKEILECIHSVRDEMMRYKGFLGGVAFLASGIGIFLTVFKDWILKHF*
Ga0157210_100015748	F077035	AGGA	MMNNDLVEKAREYAKHDEYAVTRNYINALCLEIDRLRTLNKDVFGRIQDNTEVYADAERYRWLRSASWDVDTKLVAPSVIACNGDMSEWRWMIGNEIDVAIDKFLAEGK*
Ga0157210_100015753	F085188	AGGAG	MTKLVKIGDRFVNPFNVTYIIDREIHFNDGSRWVATEPEIQDLLAIMFETPRVETVTVVEEPLIRKKKVLKKT*
Ga0157210_10001579	F088306	N/A	MNFKVPVVIREDYTMLLELHDNLIWFHTDVRKWTPEVKVKYLEDLNLLQHLVSVPLVALIEETNTKLVKFSKTIGFTFTQPSLGQDNKMYHIYSRSL*