Scaffold Ga0157210_1000156

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000156
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34194
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F048172	Metagenome	148	Y
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100015621	F018508	N/A	MELSMVKKSLKKVVGGLKQPDFPMNTFEVFMNSRLIELSVVKREHEKRWGINRLIELVDSEFRIKVWRQAERVFEASVSRDEVKLDRAVGGMVKAYAALETWAVENGVPEMPAIVAVEHEMQDGSVMVVVGTHHDATLYQQFRPDVQNRHIWTMEELELIMDSPVIKETMKIKALMPCASMVRLDKDAKEFPLGGATGFDDVKSDELEASSLPKVFDTSKMVKNTANRALEEI*
Ga0157210_100015633	F023804	N/A	VKIIKGENKMLEDLFRFKCEVEGVTLVCFLEHEPAEFNHGEAPDFPECMNLVNAFCEKIDIAHILMQSIVDHICEEALTQFNSESDE*
Ga0157210_100015635	F021491	AGGA	MSVEKKIDEMVLKYILAAEGKARIMSPPDIGKLVREAMHKGAMLGYDAGMKMSLRAHGNELEIAELTVKELTERVKELEMQMIAQQ*
Ga0157210_100015638	F052462	AGGAG	MTRHIGISVPHRRVVDEDDDIQTYKKAWVSLTDEQVHKCIAYAKGGCDIEQTAKNIELKLKGLNYD*
Ga0157210_100015645	F010601	N/A	LSQELRAGKVPVCIREDYIFYLEFFEGLLWFHIDIRRWSAEVKRGCHRDFALVEDLIGKPIYALIREDDIKLARFAKSFGWSEKCQISLLDGSKAFIYTNKV*
Ga0157210_100015653	F048172	GGAG	MIYKYLPAIEGEQRILARIDDDGLCRQTCTEQNPEYLAWVAEGNTPEPADTPA*