Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000147 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000147 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35901
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35901

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F028725	Metagenome	190	Y
F034061	Metagenome	175	N
F061497	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100014721	F028725	AGGAG	MPLERFSMSMALLERLSSGISGTEMEMILEAMEKALSAGLSNPKNAALIATYIHIIRERQDTIIHRDILLNIAATWIIRDDEDPTIINNDIHKEKLEVFEKMCNGGVHDFFTILGIEPLIPLMSMSPEDMKNLWVYNAEQQRNLIKALTHLDSVQDTERPKRQRELKLK*
Ga0157210_100014726	F005050	N/A	MGCASYCEGGLESHDLVSCGDYKLGGVSAIIIGSCESVLADPSDAAEIDAALVAGTAVLVEDIRFALPAGSPIQVDSPVGCGTQIRINEDRTATLYDANVTDQNNIFYNSLNQQKVGWIMAYLCDSGKVIYIDPPVGITTSANFIIPEQNNELQRYEVTFSWRQKQIPSQFTAPAGIFG*
Ga0157210_100014733	F034061	N/A	MCFEKLLGLKGCQISEPSTGLYIDDLGINTTLLGQLITDQYNTGIELFEAKRAFAWRKLSSDMLTRLQTTMKADTIIENKRIGQVLTNASNIDPALGAGRYAGIRVKIDPNNTSFLNFYLSQLQIDIYTMSIPVEVLVFDMTTLKFIDNFDYQSEAVEEFIGRTYKAKRRKLDLAFVYESLYDTTKMITKKGACTDCGGRLKEAHICPFVDAIGIELTTDGFNVTSSVSKKYTQGMSFVYNVNCDRESWLCSIGGLMAMPLAYATAVEIFNYALTISPNQRVNTAVSVNKGNKVFATSDATEGIVAARDIAQTRYNEELSAMLTNMRLPDDRHCFDCNKNYKYVTALP*
Ga0157210_100014736	F061497	N/A	MIDITLEGGYVTFYSSVIGAIASNVESVEVVDDNCVHLGTNVGVFLININQFSINQIKFKTSTEAFNYITNN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000147

Overview

Ecosystem & Geography

Associated Families

Sequences