Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000146 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000146 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36305
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (71.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36305

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (71.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016519	Metagenome / Metatranscriptome	246	N
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F085678	Metagenome	111	Y
F091938	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100014622	F016519	N/A	LNRAIKLSDMDGWSINMTQYLWQVKSGNEVLIVATSITLKDLMATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEARDNPDRYGVDLHLYKDSLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQELPTHFFSINKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYICL*
Ga0157210_100014623	F091938	N/A	MIVVELRQGIGLDIEFNDTICHIIDDGGPHDKLFSYSGILIKLPFLSIYIGEFEEIGELIKGDKPTGE*
Ga0157210_100014627	F085678	N/A	MNVEMLEEHDDGSATYTFDLNWEERNLLLNLGIITALKNGVNEGAKYVSNTDLGYTQCGTPDSIHGEGKQPRESGQP*
Ga0157210_100014632	F051078	AGGA	MDSSTSLRPNDIALILRPTIVDGVYQKHFQVLVSGFGPLTISEDDINNLIGMATILAATVQYMEEDEQLANKLVEYCGKMFGDVGDFFYNADHDSFGDGNFTIDTKTVGGIQ*
Ga0157210_100014642	F041756	AGGA	MKLHELEDLIMAAWITKEDIDSILWVLMDREKQPDEDELANLLIGLHSLHDARMCKLFEGYDTVLKTNKVTYKGYGIPKNPPTL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000146

Overview

Ecosystem & Geography

Associated Families

Sequences