Scaffold Ga0157210_1000083

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000083
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50896
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (56.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F014503	Metagenome / Metatranscriptome	262	Y
F019433	Metagenome	229	Y
F023522	Metagenome	209	Y
F029410	Metagenome / Metatranscriptome	188	Y
F042301	Metagenome / Metatranscriptome	158	Y
F048089	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100008316	F029410	N/A	MNQVNIPFNKAWKNIVISVSGGADSALLAYMVCELAKEHAITIHIINHVRMWKTRPWQQHDADCVYNWLFQRFYHTTFVRHKNFIAPELEYDNIGPSLTDEYGKNVSGDNIQQRAYAEFICNNVSADAYFNAVTCNPRLVEFSGMSERDIERTDSNKHLEYMIHMGKVVSHPFRFVDKAWVLSQYRQLNIMDLFDLTRSCEGEFKNINYETYTPGQYVPVCGNCFWCKEREWAINESK*
Ga0157210_100008332	F004256	GGAG	MADYEYYYNNVPGHGPCRNNLIYTSLISRDKKTFVQWYHNDTEYHKGQNQVVDPSQMEAKWLREINYLTQMRNRYPHLVPTIKNIDLASRKLYLEIDGPDFWEQAGCLTENYDSVLPDWQDQMIDIIKAHKSLGLYKYSMHPSSYFIVDGKLKSINYFFCYKNTETNFSIKDVESHIYSTRQSEMRKHIESLGIEWDTPQSFELLEQLCWTSFRTNYPADFIERVKCLE*
Ga0157210_100008366	F048089	AGGA	MLKPGKTFVLSKQTKRFMATFVNAEQRNAFKRAMIQAELASGIVVKSAPRDRNAPRGNTGYQMNDTGTASTAK*
Ga0157210_100008377	F042301	AGGAG	MVKEGSRWVGSNNDKFHVIHVIELEGHTWVHYIKENAPDGEIREYSCYQESFLSRFSPVPE*
Ga0157210_100008381	F023522	AGGA	MGNPTPSEMLTENLFKAVRAENHLKVDQRLMELLGTYSMIMLPDEDFAEKLTWCLEHCQGKFRDLSDISGRAWYFQNEQDASMFALKWS*
Ga0157210_100008383	F014503	GAG	MKTLVHHWRFNDGVTPINPGNRFGETVLPRSWSCWVYPEDDHEFEIWMARHCPTADYTHRFNSGNPMWTVTILNDKEATLFTLKYGN*
Ga0157210_100008387	F019433	N/A	MAGTRIATLDEILVTRAKIKFPHRVNFDNITRNQIEEMSIWCIDNCKDLWREEHYHALYFQFVDDRDAVMFMLKFGGRGNV*