Scaffold Ga0157210_1000051

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000051
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62859
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (83.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F002130	Metagenome / Metatranscriptome	591	Y
F002286	Metagenome	574	Y
F008972	Metagenome / Metatranscriptome	325	Y
F018699	Metagenome	233	Y
F053096	Metagenome	141	Y
F054589	Metagenome / Metatranscriptome	139	Y
F086797	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100005116	F054589	AGGAG	MKAMDLDHDMLLDAARLMESQGGSFAGHIARAFYCADSTNRERLLIAFDDLFCKYYRQHRLYELNQGEM*
Ga0157210_100005122	F053096	AGGAG	MPKYNGPAKPIPTYREPITDRGERVIFLLLAIFMAVFLYLE*
Ga0157210_100005126	F086797	N/A	MRRIQEDYQMSDSYDDYCIQMALVEKVVEEQEARRNFRTEVWITKDGRKIAIKDMDDSHLYNAYKHSQNSLMFREMVLRLFEERMKK*
Ga0157210_100005138	F018699	GAG	MATRDYKKEYKRDLETGKSGPESDQHERQRARRAYDKKGVDRAGKDIDHIKPLRAGGKSTPGNLRLRAKKANQGDNK*
Ga0157210_100005143	F002286	N/A	MAYSQKIIDDVMKTPKSLGNQLGRWAIHLDFPVTKIAYALGVTRQTVYNWFNGSEVFVAYRHRVETLLTIMQSSQHADEAWRRICHEYNLKP*
Ga0157210_100005154	F002130	N/A	MSEKSETIVDKVLGYVDSPFKLFAILVMGVVAFSGYFLWQNQEFMFDAYKESKKLPEINTSRADDASAMLFKKTGANVVAIFKVNPLFGSRVLYKAYTKDGRDKSIEDIDVGLFSQNSANNADVIKLMTNEIPCSEYRYAQSEVGLWYLDKGVTYTCRVSVPPDSHRFVGQITVGWAEPPQDIQQVKFMLEIASAMLTKRGN*
Ga0157210_100005163	F008972	N/A	MNKEEILATSLDARIQEVMHYQINIDNYVLALEEIDNLPPEERADLLSFAEQLRALLVSERLEQKKSQIMLSVIKRQLG*
Ga0157210_100005171	F000346	AGGAG	MDKQDLKQDKKMVAGAVHKHEKALHPGKPMTKLRAGGKTNSDMLKMGRGLAKVANQKSPGRKGA*