Scaffold Ga0157210_1000042

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000042
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67297
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (78.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F007102	Metagenome / Metatranscriptome	357	N
F014133	Metagenome	265	Y
F018367	Metagenome / Metatranscriptome	235	Y
F051120	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100004229	F018367	GGA	MLDAIASAQIQWPNTETKIVLVCRVVLPSEKYGSNEFLDKDGRVCRWVLEVKNDRPN*
Ga0157210_100004230	F007102	GGAGG	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNRAEEELKWHFINQGQSALWTQIVLERNSIVQRRRTQEILDAKAAKNRKAEIDEAITMGLCVLVAAAIFFLVAWGVIAMKGKF*
Ga0157210_100004251	F051120	N/A	MNDIPNFAAWNNENLAQFATESYRKMQEQHDHIEQLQGDLKDAMVEIRRLIWEASK*
Ga0157210_100004254	F014133	GAGG	MNHLKQAWEWLINHWVMPTPAELIAEELIHAQRSKLRHQSAQEYHAAIVAYNVARIKRLESLTAKQEVVE*
Ga0157210_100004271	F006894	GAGG	MTDELNELNDDGGFTWNYRIVNTKSENGGEDWYCLQEVCYGKDNKPTGYGSPCTGSEDMESLKDVWAMMNKAMELPPLQETDFTENATNL*