NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000033

Scaffold Ga0157210_1000033


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73469
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (54.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044299Metagenome154Y
F060911Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10000337F060911GGAMKSPREVRELESLIKVNKHLGIALSELTNTHSYLGSLREQKSLVSVKLKLEGILERTLKAETLAKDSFFRKLK*
Ga0157210_10000338F044299GAGMNKVSKYLMSINRQPFVNGKRVGQATPCKSYAKPAWFISYYDGYTTLENPIFTDEDGLNEAPTILEFAKNLGYYEVT*

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