Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000005 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000005 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	136017
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (71.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

136017

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

103 (71.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F008028	Metagenome / Metatranscriptome	340	Y
F011276	Metagenome	292	Y
F019762	Metagenome / Metatranscriptome	228	Y
F091434	Metagenome / Metatranscriptome	107	Y
F093229	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10000051	F008028	N/A	ATYWTYLNQERAVEPKEARQLYEYFNLCFEQGITVDDAYLLEFAAFTKEYFDGDFGPNGPFWDKVKMSYEEWYKKANPDSYAESGLRGFTSEMRTGIPFLIAQVKKSTKLSVPTYSANNGFTVAKKDLW*
Ga0157210_100000513	F011276	GGA	MIKGLMGSTNVVVSGGNTSVPYVSQNNTNPMQGMIRVWGSDMQVFDGSAWTTMSTSYATVSLDQDTQDLLQWARAQRTMAMNRLTLAQNNPALMKALEAVKRAEENFELLSTIAGEYEHVER*
Ga0157210_10000057	F001008	AGGAG	MTKAKHKPYQWIDGETADRITSLNLKDYRSYLKKELVQWKKNPKTEDNPDGHWMHPEDVSGNIRRIEALNLIINDFVVTSDEIK*
Ga0157210_100000570	F091434	GAGG	MAMTLQKTLTALCNKFITGLAIYGIGMSLAYAGYIGQNYDPQYDWCDPRFCCPPGNLDES
Ga0157210_100000589	F019762	AGGA	MNKLHESVRGTQIESTVKESEGFRVRMVKHEVLSPKGLFSIELINESLDEDGVVKDASTYNYFMTKEELQRLAYALTL*
Ga0157210_100000597	F093229	GAG	MTPQPVAEGVLLRKDYGDAKIYNIVCECGDCDHSHDVWVEAEDHGITVTIYTQQKTKWWQSNRWKIMWTLMTKGYVERESVLIMSEQQALNYANVLQSAVKDVKMFKVGRKEKSVTGKLAEQGDCV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences