Scaffold Ga0157497_1012932

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1012932
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1177
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_10129322	F084221	N/A	MSNHQQQVAEGVTGTISSILLSVPAWMVDVEFALKIFCLLLSAAASIFTIYKMNKKRR*
Ga0157497_10129323	F047677	N/A	MKWLKSIFSNESDASSKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFANKKKSNDSTSQESN*
Ga0157497_10129324	F077297	N/A	MTQQAKNQIKGAAVIVVAVTICAIMQIMYIALKDSKKAIEGYERRSERATHVIDSLEATNVQRMLQIEELNQQLERNKEIYEANISAIDSLDKHGLRRAMHNLLSELAGERYPGESNE*
Ga0157497_10129325	F070109	AGGAG	VSLTSKEVRSLLKLKAERDYLKTQFITLSKSDSISAIVIKDQAKTIDAWALTNEKTSQQLVKSQEDLYKQTARKESWRSTALIGIPISFIG