Scaffold Ga0157497_1011714

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1011714
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1254
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082698	Metagenome	113	Y
F085702	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_10117142	F082698	N/A	MSNNKMIELMTVIGEEVSENFSPTLRAKLLAIDESRGGGVCIMEVVESPYTSMKTMGSLNEDKVGMRYEAPVYRIHNAFFF*
Ga0157497_10117143	F085702	N/A	MKSSKIAIVVKGVKMVLPAEVIRMRNDGVTPYVYGSPVVAGKIIKAYVKSKYPNILVWTKSSSFANGNSLDVDVCMPNGEEVSYEIYNDIRELTNAFEYGKFNGWTDCYDSYEESGMKTENGTEIEAGVKYAHCNNKAPFGSYPDVIRMLRDMVDGKYVWGPISLEKAIEKVKSYKVSDSTISKALPYLA*