Scaffold Ga0157497_1000004

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1000004
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82354
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006586	Metagenome	369	Y
F008185	Metagenome / Metatranscriptome	337	Y
F011759	Metagenome / Metatranscriptome	287	Y
F015331	Metagenome / Metatranscriptome	255	Y
F027841	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_100000413	F027841	AGGAG	MAKRPVKPEVEEVELAENETFISDDDIDIEVVVAEETNDVYVKFSGFADTEDAEEYAEFLAETLPLLLFETTRLH*
Ga0157497_100000433	F011759	GGAGG	MKEDLIADLWHVVIEHIPEKARKDVAADFVNTLLDYGVKESVLESLMGVDPFLDDAISYATDGEGEEDDYYEDED*
Ga0157497_100000468	F008185	GGA	MPTTFKHAVNKDIGTTPVDVIQVPVGFRVTVIGCNIANTTDYDTVIVDVQVVDDSSTAAYYIKGIVIPPNTSLKLITNGEKLILPETAGLRITSDTDNSIDTVISYVELS*
Ga0157497_100000471	F015331	N/A	MSLHNDTTFWTTLQWPAAPNIDDYAVFESYCSGRVLLLGSTKLLLPLATEAWDLEPKYADAKIKNKDWFTLDEHWDTIIVDGALALGEDYCKRLLETVLPNCDRFIARAFLNPNWPTKYAVYFPHAEELTPQPQEHPINEVYTFYIWNNKQS*
Ga0157497_100000479	F006586	N/A	MQIESDRDFSKLREQFADWRRRFPMFKHDVNLIEHIIEDHIQNHSIIMVQYRQTKSRSYLEKAQLEIDAINRVIATVEKIELIALLAR*