Scaffold Ga0157203_1008021

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1008021
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1843
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010836	Metagenome / Metatranscriptome	298	Y
F082168	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10080211	F082168	N/A	MATSNFHNVNASAIFAVPLENEYDYEDLVCNLESELSNNPDYVDYGKTDKHELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYXXXXS*
Ga0157203_10080213	F010836	N/A	MSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELSNDSDYVDYGKTDKHELRSFPSRALGSIRKYAQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKIKNEIVDELESLYNDYSDRYGVTAVFSNGETIYHKL*
Ga0157203_10080214	F007751	N/A	MVKQFITNFKIKNMNQIEELKSVIGKDISQNQSPTCRARLVSVGKANCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY*
Ga0157203_10080216	F005630	N/A	MNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSKDEINSTDELYDFVTN*