Scaffold Ga0157203_1007592

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1007592
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1924
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008493	Metagenome / Metatranscriptome	332	Y
F018539	Metagenome	234	Y
F050910	Metagenome / Metatranscriptome	144	Y
F099293	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10075922	F018539	AGGA	MSTIYTANTAKAKLVYVKNKETYKIVIAFNVHKKVKDNGDIVHVFPTQAKCNYVSGDLAYETLQKDTAYVIAQAKKQLRTHNIEFV*
Ga0157203_10075923	F099293	AGGAG	MSDYTQRLDSIMLQLQEIIDEEYEDNNKIQTAFNNLAIALDEELGV*
Ga0157203_10075924	F008493	N/A	MTSERGDSYIGLTRKSLPNANKVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMNWTHEIIAVVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0157203_10075925	F050910	AGGAG	MKQDYTMYIYKADKRTKTGERLFSTTVWQDRTEAAMRNECNGLYWLYPASKGWRFEYFPTMKTVRNLM