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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012663 Open in IMG/M |
| Scaffold ID | Ga0157203_1007051 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2022 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Warsaw, Ontario | |||||||
| Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027416 | Metagenome | 194 | N |
| F050949 | Metagenome | 144 | N |
| F054034 | Metagenome | 140 | N |
| F084236 | Metagenome / Metatranscriptome | 112 | Y |
| F092047 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157203_10070511 | F054034 | N/A | MLTIRTFKKLEGLVLKDELKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTTAMTEFIMIRTINTLDR |
| Ga0157203_10070513 | F084236 | AGG | MLTINNQYKIVAESFVVSKNGLNEHWTVDDITETPYVYDIRLLRKVGIFDTMERTIRVNREKNKLEMYSVHITAAGHIIDKDQIRVGNIQTTEGMLNELKTIMEFI* |
| Ga0157203_10070514 | F027416 | GGA | MLTIENIQKLKGCKVGANGMVWKILRTKELDYNSENIYSIVLTTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRAVERQDMVDVYNFLRLIKKEIERAIC* |
| Ga0157203_10070516 | F050949 | AGGA | MLTIKNRGRLISDSFYDKMGMYWVVDKIIDDTNEYLIVIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI* |
| Ga0157203_10070517 | F092047 | N/A | MLTLKNFTNIEGMEFQLSGGNKFLIGIAKDEGLHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGIIC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |