Scaffold Ga0157203_1006166

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1006166
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2222
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F014849	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10061662	F002598	AGAAGG	MATKLYTIESLLVGKHYRSRNRFFSGEIISAEKREGIWYGDNTEAYLIGINAKGKLSTQYATIAVKVGE*
Ga0157203_10061664	F014849	GAGG	MILDIGTLIGITIALAGSITVMCLFWKQNIEQEKEIRRLRMELRKALKV*
Ga0157203_10061666	F004840	AGAAGG	MEYEYVITSAYDSEAPHWTQRYENEYGAWENFFLFTDWGMADEYRTVNLYTPTGKCYTKVFYRDGRVVVK*