Scaffold Ga0157203_1005243

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1005243
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F004432	Metagenome / Metatranscriptome	438	Y
F005117	Metagenome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10052431	F000332	N/A	LIICLLLGAEAKVGCHVREFYGIAYTVHNPSERHLQMVVWLKNNAQYCRSQDYVVIWNNISEWAGSADSAQIRTLVIHGYKDALDREKK*
Ga0157203_10052432	F005117	GGA	MKVSYDKWYPVVQPMVTPQQDLFIKRVEKMNAERAVQVQIDQQVKKFHQYEYEIYEYRMRQITINIDITNLKREIDKLV*
Ga0157203_10052433	F004432	N/A	MVTTKKPPAKVAPVKRRTPKPKAEQTINVSVAAPTAAKPETKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITSQDKMPQLAKQENLIAPARSLMKDVDGLVILVHKANLTTNSRTTVLALNADGSREKTMEGTVTSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDPGKFAGYVAVGFKEKPEDIAALKTRINLASTDMSEE*