Scaffold Ga0157203_1003774

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1003774
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3096
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F033041	Metagenome / Metatranscriptome	178	Y
F082677	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10037742	F011488	AGGA	MTNEELIEELYHKAHAKGFFHELHDRVKEVKQNGIKECEHRLVQKAYSELKKIKLAQPIAQN*
Ga0157203_10037746	F033041	GGA	LKEFKSYLKLNYQYFKKRFGILKEGSYIHGIEIKVMEKIKINPDFKFTFDSDVELRRAQSSGYIESYDMVRICIKRLDNGNQVDFPIKTREDYFDQVASLNERSNEYDMVEIYQDTHMFDMYDYI*
Ga0157203_10037748	F082677	N/A	MMKEQDKFNGLSRGQVKQIIRRNMITRVKTSKKVYDRKKEKRNLGF*