Scaffold Ga0157203_1003446

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1003446
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3288
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023848	Metagenome	208	Y
F050179	Metagenome	145	Y
F106079	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10034463	F106079	GAG	MQQQNIEIPLFGEQKTILADWLTTDKHSIDIVPVGSGKTFLAAIALPIFASDPRFHKGKDIIYSAPTGAMIKSLIWEXXXXW*
Ga0157203_10034464	F023848	GAG	LNVGIWVADEAALYTQDTLQEITNRLRPKVGQPDTAGRMIVISTPNGNGPLYDLFQSAMAMPSKYIVRHYNYLQMRSGNRNFIEEQKRILSPLKFQQDYMCSWDQVENQFFYTWNKHKYCVENIPDRGSDLYSFHDFNKRRMTAVIAQVINPGKQDGKIEILKSYAINDCSTEGIAQAIRNDFPRRRINSIIDMSGTQVNRDTTSPFGITDRVILEKYGFTIVNNRNSNPLIADTDNTSNSFINRGGLVVSKDDRELLDALGTYHFEDGSRKKLVKYTEQAYAHIDGLGDCIRYGIHHLFPIHHDSTGMPEYITSDSRFTKRAGHEHLPYSPLYPGGPTMEEILNEEQQGNEDYVSW*
Ga0157203_10034466	F050179	AGGA	MKNSHLMKKNPLYTNTYETMLQYQYAYLGGQVFKVNVRKKRPSEDSVIYLDVITNTVAQPICRYVVDTINDVLFEPGVKRIIQFATSTGAKVSTDNMEWQELFQLDSDLQNRSLTGFMENVGDLTSIFGHCWVAVDMPMKEQGNLGRPYTVAISPINVWDWEYENYGGRPILKYVK