Scaffold Ga0157203

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1002493 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012663 Open in IMG/M

Scaffold ID

Ga0157203_1002493 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Indian River, Ontario, Canada - S50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4104
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4104

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Warsaw, Ontario

Coordinates

Lat. (^o)

44.42735

Long. (^o)

-78.1359

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003408	Metagenome / Metatranscriptome	488	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10024932	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGIISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDPITYREKITNVRDMSGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF*
Ga0157203_10024933	F012456	N/A	MAGSVPGILKDSTVAQISAFLYYEAAVMSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTKPRSLHHVYEWNKTGTPSSRLFKLYAIETDGLSFRINYNFKPSVSSVPTKNKKQKKKYVFANKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVKKPGGAQASHQFALSYGRFFGGQLVNASIKSSGLQRIFNSKIAKALDVPMNIKKVQYSFTPGKIRVQADASLHAAFGGSL*
Ga0157203_10024934	F009961	GGAGG	MTVDYKVDAMFELRKFLWKELKAAGIFDAYDYYSDNLGTEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGLSFEDIWLLACEKILFTIYSTDVTEIYEIRNIMMDLFRRMDESAQDVNNSIRPSKLKFHSIHVIETSPIEPSLELKGFMSTDVILEVKYSRTTDSKGRFN*
Ga0157203_10024937	F003408	AGAAG	MPEMVQTFKSMQKTEEEKRKFLALIQGVELNESSNQNGEGSTFEDVRRRALGIGASADDVVSLQGGFAAEAGFGIGAGLGYSIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157203_1002493

Overview

Ecosystem & Geography

Associated Families

Sequences