NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001669

Scaffold Ga0157203_1001669


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001669 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5328
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F004924Metagenome / Metatranscriptome418Y
F007524Metagenome / Metatranscriptome349Y
F010760Metagenome / Metatranscriptome299Y
F032651Metagenome / Metatranscriptome179Y
F036696Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_10016691F007524GGAGMSIKNINIKKHAIEINKIMLPLIATVGLFAPDEDDLSMFKMYVGDVAHNIAALDVFNNTLDAGKLHDSIMSQDTAPREHFYAVLVYIEKNELIPERMYACS*
Ga0157203_100166910F000652AGGTGGMKVLVTTIINQELEVPEGWDRMDVYDFLAENQSFRTAFQGVSNEDQTARIIDLHVVEDTVTEMDEVAYDD*
Ga0157203_100166916F010760N/AMCGCNGKYSYTADGAKNYGPGYDVTDSVNERSVRIMAKKILANPKVKFEGDYAYVEDRIGNKMQMVVFKQPQEVFNPFDTCNS*
Ga0157203_10016692F036696AGGAMSKALNKRIAKAFGKIYDRGDAGLEYMDGHVELDADLMQYFYDDAVETLSRADKTRLADMLETVVADMEFDLETM*
Ga0157203_10016693F004924AGGAGMRDAILAKLAEIDDMLMEATLDGEQLAEMDCFKELESALHTLTEAVDYYVD*
Ga0157203_10016694F032651N/AMYTYTKAIGAKMQKVKVISVEDAGYYSSEYASGSTVKVTLQRGKEIASCTQILIWDEEYKEDCFEEWMDCALAGEEGYTYTEGA*
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