 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012663 Open in IMG/M |
| Scaffold ID | Ga0157203_1001418 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5862 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Warsaw, Ontario | |||||||
| Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000354 | Metagenome / Metatranscriptome | 1244 | Y |
| F044488 | Metagenome / Metatranscriptome | 154 | Y |
| F085611 | Metagenome / Metatranscriptome | 111 | Y |
| F088543 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157203_10014181 | F000354 | AGGAG | MAKAQYNNFASFDLNEACDHFDTEKQSNWKKINKFIVADGQEYQQVMEQEFDFYDTESNEVEAFEAGVKYALSKMNAALEAAGVDIQVCEVDLVESMGFMMVRCDDEPEDFVKRALKKPVMMVDSWV* |
| Ga0157203_100141810 | F088543 | N/A | MHTLIQAIQQVLPAVVKEINEVRIPALEAAWGRTFKDEMANENQVTVEIAKNYARPVNNTFLRHIQAILPSFTEHTTDGSDYALDKVLIEDKNSFSEGNGWVGNGFAKTPMHLLKKFKVDADGRITHAFIALVDISKCQSGWSAKTINTNRSVIQFEVGDLKHIQIVCGTLKQNKKYLKPIMEAV* |
| Ga0157203_100141813 | F085611 | N/A | MNWELYEVWSVDEDGHEDLIDTTKSLKEARQIAEANITEYFAECIIYAEDPAGELVEIERIT* |
| Ga0157203_100141814 | F044488 | AGG | MRYGVSFSTDLLNGCVVIRDFQSTPPGRVYAIIPRDSKYEGEQIAQHICDLLNKELPNELGTV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |