Scaffold Ga0157203_1001411

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001411
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5879
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F019321	Metagenome / Metatranscriptome	230	Y
F023344	Metagenome / Metatranscriptome	210	Y
F036238	Metagenome	170	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100141111	F023344	GAGG	MSEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAFAEYKFMQFAPDSLKQSYNEYYGYIEGDEFLL*
Ga0157203_100141113	F036238	AGGCGG	MGDRANFGFKQSNGDVIVLYGHWAGHEMLAQLASAVEAARPRWTDEGYATRICISHLVGQDWQSETGWGIYINSIPDNEHKIPLIDWRTQTFSLHEEASYDESTAVRGMADEPMFTQTLDAFVNKYSLTLSR*
Ga0157203_100141115	F001043	GGAG	MSDYRDGFDDGYKFGREEIIEKLREIDISDIDSWLADRLADMIESNQI*
Ga0157203_100141116	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMMGLDPMALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSEYEPTGYTGR*
Ga0157203_100141117	F019321	N/A	YADSDDQETLRSIAEALDIALTRTVEWSATIEVSGTMELDLLADYDTDIESEITDNLYVDSQNGNIEIVDTEVCNVREN*
Ga0157203_10014114	F000441	AGGA	MSDDYINDQLNTAQKLLWGGSETENIEAHNIIARLIKDRIEQTNLT*
Ga0157203_10014116	F000263	GAGG	MNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARTL*
Ga0157203_10014118	F063705	GAG	MKLHLISLNQDWELAKDNAPLNEDEYDESDDYFRGAIEATEHLLSVATDIMESTNERYN*
Ga0157203_10014119	F001460	GGAGG	MLGYTESDLNRMINAVHDAKLFYLRTPSDLIDKTELVKDLEMSVSFMQGLWAEGYFD*