Scaffold Ga0157203_1001229

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001229
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6443
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F004051	Metagenome / Metatranscriptome	455	Y
F017829	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10012291	F001125	GGCGG	MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLSVNEIGDNEHKVPVIDWKNKTFTLYEHDLHSPVFSLALDAFVTKYSSQPSMV*
Ga0157203_100122910	F004051	GAGG	MTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLLGV
Ga0157203_10012295	F000980	N/A	MTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDTPLQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKHNNVLTGKIDAVKEIICEAYADSQDQDTLREIAEALGIELIKEVEFTASIEVTGTYSFNILENDYDMDLESEVTDALFADSNNGNIEIGDTEVCNVREC*
Ga0157203_10012298	F017829	AGG	MKNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI*